PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G042900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 810aa    MW: 92023.7 Da    PI: 9.6354
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G042900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.11.2e-17135214190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fYn Y+ evGF +r+s+ +++  n+ +tk++++Cs+eg+++++k++         + rtgCka++++ + kd+ w++++ ++eHnH++
  Sobic.006G042900.1.p 135 EFYNLYSWEVGFGIRTSRGRTN-GNDYTTKKDLCCSCEGRSRSQKTS---------SCRTGCKAMIRLLRLKDHSWYISRSVTEHNHSM 213
                           6****************99998.6666************99987766.........99*****************************98 PP

                  FAR1  90 a 90 
                           +
  Sobic.006G042900.1.p 214 S 214
                           6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-13135214IPR004330FAR1 DNA binding domain
PfamPF105512.3E-27336428IPR018289MULE transposase domain
PROSITE profilePS509669.829617651IPR007527Zinc finger, SWIM-type
SMARTSM005750.0045626653IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MLDTATTAAV LAATCRSGAK QSVFLGRHVG GVEGSSAGLR PPALVGGMEG TGGEECCGGS  60
TSGTSIATEG DAKHLTTSYD CKKRKRGMSG PDAKISPAEE SAMTKAIKSS KEREGEPIFY  120
PYEGTRFNSF EEAKEFYNLY SWEVGFGIRT SRGRTNGNDY TTKKDLCCSC EGRSRSQKTS  180
SCRTGCKAMI RLLRLKDHSW YISRSVTEHN HSMSATCGEK KQWLSHSEID PLTKDFIRRL  240
RENNVTTGRV CSILGTSNGV GGLPVRREVI RSVCARLAQE NIEDDISKTM TLLDNMKMKD  300
PSMQIRYKLD DSGRILHMLW CTGRNKNDYD RFGDALTFDT TYRTNLYNLP FGLFIGVNNH  360
FQSTVFGGVL LTSEKTEDFE WAFSNFVDVM RGKEPRTILT DQCQAMAAAI KTTLTSARHR  420
WCKWHVLRKA KQWLGQVYSK NNGFKKEFHK LVTEEVSKYK FERRWRQLVR KYKVEDNKFL  480
KRIYQNRGMW ARPYFMDVFC AGMTSTQRSE SANHMLKQFI QRSSPMHIFV SKFSEFQNDR  540
KEQEDTEVHF TKQMQRKRRI GVPLERHAEE VYTRAMYERL YNELYRAGSY VMKGRDKADG  600
YLVVHYKELG TADERIFVVT DEGDFVNCSC GLYNHMGMLC RHALKVLMHQ DRVKLPSGNI  660
LDRWRRDVLE DPGNGRDDGV ESSSIESTAY IQKKLMVRRV LAMAGVDAAL DESGYKEALE  720
ALDKIISLRK DQKLGEQAVI SGDGSIKPTC CPNRPKKKGR PCSTSLKSYE TNLKKQKRTE  780
QGKKRYTSST SEDEENPMSG KTKALNEIK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442202.10.0hypothetical protein SORBIDRAFT_08g016320
TrEMBLC5YP290.0C5YP29_SORBI; Putative uncharacterized protein Sb08g016320
STRINGSb08g016320.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-80FAR1-related sequence 5